Download MetScape
MetScape is a Cytoscape plugin which is used to visualize and analyze metabolomic data. It uses the data from Edinburgh Human Metabolic Network reconstruction (Ma et al., Mol Syst Biol. 2007; 3: 135). It allows user to visualize compound networks and display related information about reactions, enzymes, and pathways. Using a modified DynamicXpr plugin, a user can upload experimental metabolomic data and visualize the network over time or conditions with changing node color or node color and node size. MetScape allows you to display the entire metabolic network or pathways-specific networks. You can apply a pathway filter to a network and create sub networks from resulting subsets of compounds. In the future, we will integrate MiMI, a database of gene, gene product, interaction and pathways, to show gene related information.
